HL_4V4V_097

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_097 not in the Motif Atlas

Geometric match to HL_4V83_139

Geometric discrepancy: 0.2749

The information below is about HL_4V83_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V4V|1|B0|U|2404
4V4V|1|B0|G|2405
4V4V|1|B0|A|2406
4V4V|1|B0|A|2407
4V4V|1|B0|U|2408
4V4V|1|B0|G|2409
4V4V|1|B0|G|2410
4V4V|1|B0|A|2411
4V4V|1|B0|A|2412
4V4V|1|B0|G|2413

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L15