HL_4V4V_100

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

4V4V|1|B0|U|2555, 4V4V|1|B0|C|2556

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4V_100 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.5523

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V4V|1|B0|C|2551
4V4V|1|B0|U|2552
4V4V|1|B0|G|2553
4V4V|1|B0|U|2554
4V4V|1|B0|U|2555
4V4V|1|B0|C|2556
4V4V|1|B0|G|2557

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AU

Transfer RNA; tRNA

Chain AV

Transfer RNA; tRNA

Chain BI

50S ribosomal protein L14