HL_4V4W_005

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGUUUUC

Length

7 nucleotides

Bulged bases

4V4W|1|AA|U|202

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_005 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.3777

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

4V4W|1|AA|G|200
4V4W|1|AA|G|201
4V4W|1|AA|U|202
4V4W|1|AA|U|203
4V4W|1|AA|U|204
4V4W|1|AA|U|216
4V4W|1|AA|C|217

Current chains

Chain AA

16S ribosomal RNA

Nearby chains