HL_4V4W_007

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.1012

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4W|1|AA|U|296
4V4W|1|AA|G|297
4V4W|1|AA|A|298
4V4W|1|AA|G|299
4V4W|1|AA|A|300
4V4W|1|AA|G|301

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AE

30S ribosomal subunit protein S5

Chain AQ

30S ribosomal subunit protein S17