HL_4V4W_032

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_032 not in the Motif Atlas

Geometric match to HL_4V88_222

Geometric discrepancy: 0.2523

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V4W|1|AA|G|1515
4V4W|1|AA|G|1516
4V4W|1|AA|G|1517
4V4W|1|AA|A|1518
4V4W|1|AA|A|1519
4V4W|1|AA|C|1520

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA