HL_4V4W_057

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGGAAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_057 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3719

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V4W|1|B0|G|628
4V4W|1|B0|G|629
4V4W|1|B0|G|630
4V4W|1|B0|A|631
4V4W|1|B0|A|632
4V4W|1|B0|A|633
4V4W|1|B0|C|634
4V4W|1|B0|C|635

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L15