HL_4V4W_066

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4V4W|1|B0|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_066 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1567

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V4W|1|B0|C|1064
4V4W|1|B0|U|1065
4V4W|1|B0|U|1066
4V4W|1|B0|A|1067
4V4W|1|B0|G|1068
4V4W|1|B0|A|1069
4V4W|1|B0|A|1070
4V4W|1|B0|G|1071
4V4W|1|B0|C|1072
4V4W|1|B0|A|1073
4V4W|1|B0|G|1074

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L11