HL_4V4W_071

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUUAAUCG

Length

9 nucleotides

Bulged bases

4V4W|1|B0|U|1325, 4V4W|1|B0|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_071 not in the Motif Atlas

Geometric match to HL_7A0S_041

Geometric discrepancy: 0.2883

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V4W|1|B0|C|1323
4V4W|1|B0|G|1324
4V4W|1|B0|U|1325
4V4W|1|B0|U|1326
4V4W|1|B0|A|1327
4V4W|1|B0|A|1328
4V4W|1|B0|U|1329
4V4W|1|B0|C|1330
4V4W|1|B0|G|1331

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22