HL_4V4W_077

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

4V4W|1|B0|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_077 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.5339

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4W|1|B0|U|1629
4V4W|1|B0|A|1630
4V4W|1|B0|G|1631
4V4W|1|B0|A|1632
4V4W|1|B0|G|1633
4V4W|1|B0|A|1634
4V4W|1|B0|A|1635
4V4W|1|B0|U|1636
4V4W|1|B0|A|1637

Current chains

Chain B0

23S ribosomal RNA

Nearby chains