HL_4V4W_084

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_084 not in the Motif Atlas

Geometric match to HL_4UYK_001

Geometric discrepancy: 0.3391

The information below is about HL_4UYK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14063.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V4W|1|B0|G|1910
4V4W|1|B0|U|1911
4V4W|1|B0|A|1912
4V4W|1|B0|A|1913
4V4W|1|B0|C|1914
4V4W|1|B0|U|1915
4V4W|1|B0|A|1916
4V4W|1|B0|U|1917
4V4W|1|B0|A|1918
4V4W|1|B0|A|1919
4V4W|1|B0|C|1920

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AU

Transfer RNA; tRNA