HL_4V4W_096

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAGUUCAUAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_096 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.3314

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41169.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

4

Unit IDs

4V4W|1|B0|G|2470
4V4W|1|B0|A|2471
4V4W|1|B0|G|2472
4V4W|1|B0|U|2473
4V4W|1|B0|U|2474
4V4W|1|B0|C|2475
4V4W|1|B0|A|2476
4V4W|1|B0|U|2477
4V4W|1|B0|A|2478
4V4W|1|B0|U|2479
4V4W|1|B0|C|2480

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AU

Transfer RNA; tRNA

Chain BK

50S ribosomal protein L16