HL_4V4W_097

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4V4W|1|B0|G|2529

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_097 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1738

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4V4W|1|B0|U|2528
4V4W|1|B0|G|2529
4V4W|1|B0|A|2530
4V4W|1|B0|A|2531
4V4W|1|B0|G|2532
4V4W|1|B0|U|2533
4V4W|1|B0|A|2534
4V4W|1|B0|G|2535

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L6