HL_4V4W_107

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_107 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.2337

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V4W|1|AA|U|157
4V4W|1|AA|G|158
4V4W|1|AA|G|159
4V4W|1|AA|A|160
4V4W|1|AA|A|161
4V4W|1|AA|A|162
4V4W|1|AA|C|163
4V4W|1|AA|G|164

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L19