HL_4V4W_110

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGUUAAGUCC

Length

10 nucleotides

Bulged bases

4V4W|1|AA|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4W_110 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3945

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4W|1|AA|G|1088
4V4W|1|AA|G|1089
4V4W|1|AA|U|1090
4V4W|1|AA|U|1091
4V4W|1|AA|A|1092
4V4W|1|AA|A|1093
4V4W|1|AA|G|1094
4V4W|1|AA|U|1095
4V4W|1|AA|C|1096
4V4W|1|AA|C|1097

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal subunit protein S2