HL_4V4Y_015

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_015 not in the Motif Atlas

Homologous match to HL_4LFB_015

Geometric discrepancy: 0.3649

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V4Y|1|AA|C|689
4V4Y|1|AA|G|690
4V4Y|1|AA|G|691
4V4Y|1|AA|U|692
4V4Y|1|AA|G|693
4V4Y|1|AA|A|694
4V4Y|1|AA|A|695
4V4Y|1|AA|A|696
4V4Y|1|AA|U|697
4V4Y|1|AA|G|698

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

mRNA

Chain AD

Transfer RNA; tRNA

Chain AJ

30S ribosomal protein S7

Chain AN

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA