HL_4V4Z_045

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_045 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.3933

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4Z|1|BA|C|246
4V4Z|1|BA|G|247
4V4Z|1|BA|G|248
4V4Z|1|BA|C|249
4V4Z|1|BA|G|250
4V4Z|1|BA|A|251
4V4Z|1|BA|G|252

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain B3

50S RIBOSOMAL PROTEIN L31

Chain B7

50S RIBOSOMAL PROTEIN L35

Chain BO

50S RIBOSOMAL PROTEIN L15