HL_4V4Z_059

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

4V4Z|1|BA|U|747, 4V4Z|1|BA|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_059 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.333

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

4V4Z|1|BA|G|744
4V4Z|1|BA|G|745
4V4Z|1|BA|A|746
4V4Z|1|BA|U|747
4V4Z|1|BA|G|748
4V4Z|1|BA|C|749
4V4Z|1|BA|A|750
4V4Z|1|BA|A|751
4V4Z|1|BA|A|752
4V4Z|1|BA|C|753

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S RIBOSOMAL PROTEIN L32

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BV

50S RIBOSOMAL PROTEIN L22