HL_4V50_199

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_199 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.1824

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V50|1|DB|A|2471
4V50|1|DB|G|2472
4V50|1|DB|U|2473
4V50|1|DB|U|2474
4V50|1|DB|C|2475
4V50|1|DB|A|2476
4V50|1|DB|U|2477
4V50|1|DB|A|2478
4V50|1|DB|U|2479

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DM

50S ribosomal protein L16