HL_4V53_039

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_039 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1771

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V53|1|BB|U|158
4V53|1|BB|G|159
4V53|1|BB|A|160
4V53|1|BB|A|161
4V53|1|BB|U|162
4V53|1|BB|C|163
4V53|1|BB|C|164
4V53|1|BB|A|165
4V53|1|BB|U|166
4V53|1|BB|A|167
4V53|1|BB|G|168

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BZ

50S ribosomal protein L28

Chain CA

Small subunit ribosomal RNA; SSU rRNA