HL_4V53_068

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_068 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.1315

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V53|1|BB|C|1363
4V53|1|BB|G|1364
4V53|1|BB|A|1365
4V53|1|BB|A|1366
4V53|1|BB|A|1367
4V53|1|BB|G|1368

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BZ

50S ribosomal protein L28