HL_4V53_149

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4V53|1|DB|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_149 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.106

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V53|1|DB|A|382
4V53|1|DB|C|383
4V53|1|DB|A|384
4V53|1|DB|C|385
4V53|1|DB|G|386
4V53|1|DB|U|387
4V53|1|DB|G|388
4V53|1|DB|G|389
4V53|1|DB|U|390
4V53|1|DB|A|391
4V53|1|DB|U|392

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DZ

50S ribosomal protein L28