HL_4V54_082

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V54|1|BB|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V54_082 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.5982

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V54|1|BB|G|1910
4V54|1|BB|U|1911
4V54|1|BB|A|1912
4V54|1|BB|A|1913
4V54|1|BB|C|1914
4V54|1|BB|U|1915
4V54|1|BB|A|1916
4V54|1|BB|U|1917
4V54|1|BB|A|1918
4V54|1|BB|A|1919
4V54|1|BB|C|1920

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain B6

ribosome recycling factor