HL_4V55_085

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

4V55|1|BB|C|2145, 4V55|1|BB|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_085 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3928

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

4V55|1|BB|A|2142
4V55|1|BB|C|2143
4V55|1|BB|G|2144
4V55|1|BB|C|2145
4V55|1|BB|C|2146
4V55|1|BB|A|2147
4V55|1|BB|G|2148
4V55|1|BB|U|2149

Current chains

Chain BB

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA