HL_4V55_149

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4V55|1|DB|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_149 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1189

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V55|1|DB|A|382
4V55|1|DB|C|383
4V55|1|DB|A|384
4V55|1|DB|C|385
4V55|1|DB|G|386
4V55|1|DB|U|387
4V55|1|DB|G|388
4V55|1|DB|G|389
4V55|1|DB|U|390
4V55|1|DB|A|391
4V55|1|DB|U|392

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DZ

50S ribosomal protein L28