HL_4V55_178

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

4V55|1|DB|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V55_178 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0851

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V55|1|DB|A|1630
4V55|1|DB|G|1631
4V55|1|DB|A|1632
4V55|1|DB|G|1633
4V55|1|DB|A|1634
4V55|1|DB|A|1635
4V55|1|DB|U|1636

Current chains

Chain DB

23S rRNA

Nearby chains