HL_4V56_162

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GCAACAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V56_162 not in the Motif Atlas

Geometric match to HL_2D6F_005

Geometric discrepancy: 0.3058

The information below is about HL_2D6F_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4V56|1|DB|G|875
4V56|1|DB|C|876
4V56|1|DB|A|877
4V56|1|DB|A|878
4V56|1|DB|C|898
4V56|1|DB|A|899
4V56|1|DB|A|900
4V56|1|DB|C|901
4V56|1|DB|C|902

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16