HL_4V57_039

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V57_039 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1735

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V57|1|BB|U|158
4V57|1|BB|G|159
4V57|1|BB|A|160
4V57|1|BB|A|161
4V57|1|BB|U|162
4V57|1|BB|C|163
4V57|1|BB|C|164
4V57|1|BB|A|165
4V57|1|BB|U|166
4V57|1|BB|A|167
4V57|1|BB|G|168

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BZ

50S ribosomal protein L28

Chain CA

Small subunit ribosomal RNA; SSU rRNA