HL_4V5A_032

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

54

Unit IDs

4V5A|1|AV|A|30
4V5A|1|AV|U|31
4V5A|1|AV|U|32
4V5A|1|AV|G|33
4V5A|1|AV|A|34
4V5A|1|AV|A|35
4V5A|1|AV|A|36
4V5A|1|AV|A|37
4V5A|1|AV|U|38

Current chains

Chain AV

P-SITE RNA ASL-PHE

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AW

Transfer RNA; tRNA

Chain AX

MRNA