HL_4V5A_045

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V5A|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_045 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1799

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4V5A|1|BA|U|305
4V5A|1|BA|U|306
4V5A|1|BA|G|307
4V5A|1|BA|G|308
4V5A|1|BA|G|309
4V5A|1|BA|A|310
4V5A|1|BA|A|311
4V5A|1|BA|G|312

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BY

50S RIBOSOMAL PROTEIN L24