HL_4V5A_139

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V5A|1|CW|C|17, 4V5A|1|CW|U|18, 4V5A|1|CW|G|19, 4V5A|1|CW|G|20, 4V5A|1|CW|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_139 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.273

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

4V5A|1|CW|C|13
4V5A|1|CW|A|14
4V5A|1|CW|G|15
4V5A|1|CW|C|16
4V5A|1|CW|C|17
4V5A|1|CW|U|18
4V5A|1|CW|G|19
4V5A|1|CW|G|20
4V5A|1|CW|U|21
4V5A|1|CW|A|22
4V5A|1|CW|G|23

Current chains

Chain CW

TRNA-FMET

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DC

50S RIBOSOMAL PROTEIN L1