HL_4V5A_174

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4V5A|1|DA|G|1325, 4V5A|1|DA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_174 not in the Motif Atlas

Geometric match to HL_7A0S_033

Geometric discrepancy: 0.1427

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4V5A|1|DA|G|1324
4V5A|1|DA|G|1325
4V5A|1|DA|U|1326
4V5A|1|DA|C|1327
4V5A|1|DA|G|1328
4V5A|1|DA|U|1329
4V5A|1|DA|C|1330

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DR

50S RIBOSOMAL PROTEIN L17

Chain DW

50S RIBOSOMAL PROTEIN L22