HL_4V5A_215

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCCCGACGAGGGG

Length

13 nucleotides

Bulged bases

4V5A|1|AA|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_215 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3328

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4V5A|1|AA|C|455
4V5A|1|AA|C|456
4V5A|1|AA|C|457
4V5A|1|AA|C|458
4V5A|1|AA|G|460
4V5A|1|AA|A|461
4V5A|1|AA|C|470
4V5A|1|AA|G|471
4V5A|1|AA|A|472
4V5A|1|AA|G|473
4V5A|1|AA|G|474
4V5A|1|AA|G|475
4V5A|1|AA|G|476

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16