HL_4V5A_251

3D structure

PDB id

4V5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5A_251 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2564

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V5A|1|DA|C|461
4V5A|1|DA|C|462
4V5A|1|DA|G|463
4V5A|1|DA|U|464
4V5A|1|DA|G|465
4V5A|1|DA|A|466
4V5A|1|DA|G|467
4V5A|1|DA|G|468

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DX

50S RIBOSOMAL PROTEIN L23