HL_4V5A_262
3D structure
- PDB id
- 4V5A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGCGACC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5A_262 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2397
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
4V5A|1|DB|G|85
4V5A|1|DB|G|86
4V5A|1|DB|G|87
4V5A|1|DB|C|88
4V5A|1|DB|G|89
4V5A|1|DB|A|90
4V5A|1|DB|C|91
4V5A|1|DB|C|92
Current chains
- Chain DB
- 5S ribosomal RNA
Nearby chains
- Chain D3
- 50S RIBOSOMAL PROTEIN L30
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
- Chain DZ
- 50S RIBOSOMAL PROTEIN L25
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