HL_4V5B_005

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGGAAACC

Length

8 nucleotides

Bulged bases

4V5B|1|AB|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_005 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.2489

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5B|1|AB|G|122
4V5B|1|AB|G|123
4V5B|1|AB|G|124
4V5B|1|AB|A|125
4V5B|1|AB|A|126
4V5B|1|AB|A|127
4V5B|1|AB|C|128
4V5B|1|AB|C|129

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A2

50S RIBOSOMAL PROTEIN L34

Chain AT

50S RIBOSOMAL PROTEIN L23