HL_4V5B_006

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4V5B|1|AB|U|139, 4V5B|1|AB|G|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_006 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3683

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V5B|1|AB|U|137
4V5B|1|AB|U|138
4V5B|1|AB|U|139
4V5B|1|AB|C|140
4V5B|1|AB|G|141
4V5B|1|AB|A|142

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AT

50S RIBOSOMAL PROTEIN L23