HL_4V5B_014

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

4V5B|1|AB|G|386, 4V5B|1|AB|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_014 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.3291

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V5B|1|AB|G|381
4V5B|1|AB|A|382
4V5B|1|AB|C|383
4V5B|1|AB|A|384
4V5B|1|AB|C|385
4V5B|1|AB|G|386
4V5B|1|AB|U|387
4V5B|1|AB|G|388
4V5B|1|AB|G|389
4V5B|1|AB|U|390
4V5B|1|AB|A|391
4V5B|1|AB|U|392
4V5B|1|AB|C|393

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

50S RIBOSOMAL PROTEIN L31