HL_4V5B_025

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

4V5B|1|AB|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_025 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3278

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V5B|1|AB|G|778
4V5B|1|AB|U|779
4V5B|1|AB|G|780
4V5B|1|AB|A|781
4V5B|1|AB|A|782
4V5B|1|AB|A|783
4V5B|1|AB|G|784
4V5B|1|AB|G|785
4V5B|1|AB|C|786

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AC

50S RIBOSOMAL PROTEIN L2