HL_4V5B_029

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGAAACAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_029 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2582

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V5B|1|AB|G|977
4V5B|1|AB|G|978
4V5B|1|AB|A|979
4V5B|1|AB|A|980
4V5B|1|AB|A|981
4V5B|1|AB|C|982
4V5B|1|AB|A|983
4V5B|1|AB|A|984
4V5B|1|AB|C|985
4V5B|1|AB|C|986

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AQ

50S RIBOSOMAL PROTEIN L20

Chain AY

50S RIBOSOMAL PROTEIN L30