HL_4V5B_032

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_032 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3519

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V5B|1|AB|C|1221
4V5B|1|AB|U|1222
4V5B|1|AB|G|1223
4V5B|1|AB|U|1224
4V5B|1|AB|G|1225
4V5B|1|AB|A|1226
4V5B|1|AB|G|1227
4V5B|1|AB|G|1228

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AQ

50S RIBOSOMAL PROTEIN L20

Chain AR

50S RIBOSOMAL PROTEIN L21