3D structure

PDB id
4V5B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of PDF binding helix in complex with the ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
4V5B|1|AB|C|1870
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V5B_047 not in the Motif Atlas
Homologous match to HL_5J7L_180
Geometric discrepancy: 0.3932
The information below is about HL_5J7L_180
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

4V5B|1|AB|C|1868
4V5B|1|AB|G|1869
4V5B|1|AB|C|1870
4V5B|1|AB|A|1871
4V5B|1|AB|A|1872
4V5B|1|AB|G|1873

Current chains

Chain AB
23S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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