HL_4V5B_048

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_048 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1846

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V5B|1|AB|G|1910
4V5B|1|AB|U|1911
4V5B|1|AB|A|1912
4V5B|1|AB|A|1913
4V5B|1|AB|C|1914
4V5B|1|AB|U|1915
4V5B|1|AB|A|1916
4V5B|1|AB|U|1917
4V5B|1|AB|A|1918
4V5B|1|AB|A|1919
4V5B|1|AB|C|1920

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA