HL_4V5B_051

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

4V5B|1|AB|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_051 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.5745

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

4V5B|1|AB|A|2142
4V5B|1|AB|C|2143
4V5B|1|AB|G|2144
4V5B|1|AB|C|2145
4V5B|1|AB|C|2146
4V5B|1|AB|A|2147
4V5B|1|AB|G|2148
4V5B|1|AB|U|2149

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain BK

30S RIBOSOMAL PROTEIN S11

Chain DA

Small subunit ribosomal RNA; SSU rRNA