HL_4V5B_054

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V5B|1|AB|A|2268, 4V5B|1|AB|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1647

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V5B|1|AB|C|2264
4V5B|1|AB|U|2265
4V5B|1|AB|A|2266
4V5B|1|AB|A|2267
4V5B|1|AB|A|2268
4V5B|1|AB|G|2269
4V5B|1|AB|A|2270
4V5B|1|AB|G|2271
4V5B|1|AB|U|2272
4V5B|1|AB|A|2273
4V5B|1|AB|A|2274
4V5B|1|AB|C|2275
4V5B|1|AB|G|2276

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain AM

50S RIBOSOMAL PROTEIN L16

Chain AW

50S RIBOSOMAL PROTEIN L27