HL_4V5B_061

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUGAAGUAGG

Length

10 nucleotides

Bulged bases

4V5B|1|AB|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_061 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.3906

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

4V5B|1|AB|C|2527
4V5B|1|AB|U|2528
4V5B|1|AB|G|2529
4V5B|1|AB|A|2530
4V5B|1|AB|A|2531
4V5B|1|AB|G|2532
4V5B|1|AB|U|2533
4V5B|1|AB|A|2534
4V5B|1|AB|G|2535
4V5B|1|AB|G|2536

Current chains

Chain AB

23S RIBOSOMAL RNA

Nearby chains

Chain A4

50S RIBOSOMAL PROTEIN L36

Chain AG

50S RIBOSOMAL PROTEIN L6