HL_4V5B_075

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V5B|1|BA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_075 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1841

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V5B|1|BA|G|259
4V5B|1|BA|G|260
4V5B|1|BA|U|261
4V5B|1|BA|A|262
4V5B|1|BA|A|263
4V5B|1|BA|C|264
4V5B|1|BA|G|265
4V5B|1|BA|G|266
4V5B|1|BA|C|267

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BQ

30S RIBOSOMAL PROTEIN S17

Chain BT

30S RIBOSOMAL PROTEIN S20