HL_4V5B_091

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_091 not in the Motif Atlas

Geometric match to HL_4V88_210

Geometric discrepancy: 0.194

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V5B|1|BA|A|1012
4V5B|1|BA|G|1013
4V5B|1|BA|A|1014
4V5B|1|BA|G|1015
4V5B|1|BA|A|1016
4V5B|1|BA|U|1017

Current chains

Chain BA

16S RIBOSOMAL RNA

Nearby chains

Chain BN

30S RIBOSOMAL PROTEIN S14

Chain BS

30S RIBOSOMAL PROTEIN S19