HL_4V5B_102
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- GUCUC
- Length
- 5 nucleotides
- Bulged bases
- 4V5B|1|CA|C|88, 4V5B|1|CA|U|89
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5B_102 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.2882
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
4V5B|1|CA|G|86
4V5B|1|CA|U|87
4V5B|1|CA|C|88
4V5B|1|CA|U|89
4V5B|1|CA|C|90
Current chains
- Chain CA
- 5S RIBOSOMAL RNA
Nearby chains
- Chain CB
- Large subunit ribosomal RNA; LSU rRNA
- Chain CM
- 50S RIBOSOMAL PROTEIN L16
Coloring options: