HL_4V5B_102

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

4V5B|1|CA|C|88, 4V5B|1|CA|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_102 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2882

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V5B|1|CA|G|86
4V5B|1|CA|U|87
4V5B|1|CA|C|88
4V5B|1|CA|U|89
4V5B|1|CA|C|90

Current chains

Chain CA

5S RIBOSOMAL RNA

Nearby chains

Chain CB

Large subunit ribosomal RNA; LSU rRNA

Chain CM

50S RIBOSOMAL PROTEIN L16