HL_4V5B_103
3D structure
- PDB id
- 4V5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of PDF binding helix in complex with the ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.74 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V5B_103 not in the Motif Atlas
- Homologous match to HL_7A0S_001
- Geometric discrepancy: 0.3783
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V5B|1|CB|U|59
4V5B|1|CB|G|60
4V5B|1|CB|C|61
4V5B|1|CB|U|62
4V5B|1|CB|A|63
4V5B|1|CB|A|64
4V5B|1|CB|U|65
4V5B|1|CB|C|66
4V5B|1|CB|U|67
4V5B|1|CB|G|68
Current chains
- Chain CB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C2
- 50S RIBOSOMAL PROTEIN L34
- Chain CT
- 50S RIBOSOMAL PROTEIN L23
- Chain CX
- 50S RIBOSOMAL PROTEIN L29
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