HL_4V5B_112

3D structure

PDB id

4V5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of PDF binding helix in complex with the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V5B|1|CB|G|329, 4V5B|1|CB|A|330, 4V5B|1|CB|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V5B_112 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3098

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

4V5B|1|CB|G|327
4V5B|1|CB|U|328
4V5B|1|CB|G|329
4V5B|1|CB|A|330
4V5B|1|CB|C|331
4V5B|1|CB|A|332
4V5B|1|CB|G|333
4V5B|1|CB|C|334
4V5B|1|CB|C|335

Current chains

Chain CB

23S RIBOSOMAL RNA

Nearby chains

Chain CE

50S RIBOSOMAL PROTEIN L4

Chain CU

50S RIBOSOMAL PROTEIN L24